Stem-loop cin-mir-1473

Accession

MI0007129

Description

Ciona intestinalis cin-mir-1473 precursor miRNA

Sequence

222 reads, 93 reads per million, 2 experiments

gcggcucuggcACCCACGUAUUCGAUCUUGCGagagauaaaggacaucUCAAGCUCGGGUUUAUGGGUGUuggaccaagc
..((.(((((((((((...((((((....((..(((((.......)))))..))))))))...)))))))))))))....

Structure

--gc  c           CGU      UCUU  Ga     aa 
    gg ucuggcACCCA   AUUCGA    GC  gagau  a
    || |||||||||||   ||||||    ||  |||||  g
    cc agguUGUGGGU   UGGGCU    CG  CUcua  g
cgaa  -           AUU      ----  AA     ca 

Annotation confidence Not enough data

Genome context

10p: 1218098-1218177 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-1473

Mature cin-miR-1473-5p

• Accession: MIMAT0015245
• Description: Ciona intestinalis cin-miR-1473-5p mature miRNA
• Sequence: 12 - ACCCACGUAUUCGAUCUUGCG - 32
• Evidence: experimental ; Illumina [2]

Mature cin-miR-1473-3p

• Accession: MIMAT0006067
• Description: Ciona intestinalis cin-miR-1473-3p mature miRNA
• Sequence: 49 - UCAAGCUCGGGUUUAUGGGUGU - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39