miRBase entry: odi-mir-1490a-2

Stem-loop odi-mir-1490a-2


Accession
MI0007101
Description
Oikopleura dioica odi-mir-1490a-2 precursor miRNA


Sequence

uaucgccagaaaauuAGGCAGUGAGUUGAUAGCGCCCUGAacugcgaauuucaccgucccgggacuaucguuacugucccauuuucuggccgaauauucgac
....((((((((((..((((((((..((((((...((((....(((........)))..)))).))))))))))))))..))))))))))(((....)))..

Structure
--------uauc          uA        GU      CGC    Aacu   aau 
            gccagaaaau  GGCAGUGA  UGAUAG   CCUG    gcg   u
            ||||||||||  ||||||||  ||||||   ||||    |||    
            cggucuuuua  cugucauu  gcuauc   gggc    ugc   u
cagcuuauaagc          cc        --      --a    --cc   cac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1490a

Accession MIMAT0006042
Description Oikopleura dioica odi-miR-1490a mature miRNA
Sequence 16 - AGGCAGUGAGUUGAUAGCGCCCUGA - 40
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080