miRBase entry: odi-mir-1476

Stem-loop odi-mir-1476


Accession
MI0007087
Description
Oikopleura dioica odi-mir-1476 precursor miRNA


Sequence

agccgagaaaucuuuUCUGGGCAAAGGUAAAUGUAUGcguaagcaucacuuacccacaucuUACAUGUACCGUUGCUCAGAGAcggucucgcgcuaucaucg
((((((((..((.(((((((((((.((((.(((((((.(((((.....))))).)).....))))).)))).))))))))))).))))))).))).......

Structure
-------   -     aa  u           A    A     -----  c     c 
       agc cgaga  uc uuUCUGGGCAA GGUA AUGUA     UG guaag a
       ||| |||||  || ||||||||||| |||| |||||     || ||||| u
       ucg gcucu  gg AGAGACUCGUU CCAU UACAU     ac cauuc c
gcuacua   c     --  c           G    G     ucuac  c     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1476-5p

Accession MIMAT0006027
Description Oikopleura dioica odi-miR-1476-5p mature miRNA
Sequence 16 - UCUGGGCAAAGGUAAAUGUAUG - 37
Evidence experimental
cloned [1]

Mature odi-miR-1476-3p

Accession MIMAT0006028
Description Oikopleura dioica odi-miR-1476-3p mature miRNA
Sequence 62 - UACAUGUACCGUUGCUCAGAGA - 83
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080