Stem-loop ptc-MIR1450

Accession

MI0007050

Description

Populus trichocarpa ptc-MIR1450 precursor miRNA

Literature search

2 open access papers mention ptc-MIR1450
(7 sentences)

Sequence

1354312 reads, 21771.0 reads per million, 9 experiments

gagucaauuaggucaguuguguaGUCUGACCCGAGCCAUUGAAGAcaaucauuuguuggugucucauuggauuuguuaccugacaguguuuauccaacaaaugauucucUUCAAUGGCUCGGUCAGGUUACacaagcaaucuaguuggcuc
(((((((((((((...(((((((((((((((.(((((((((((((.(((((((((((((.....(((((..............))))).....))))))))))))).))))))))))))))))))))))))))))...)))))))))))))

Structure

             cag               C             c             ugucu     gauuug 
gagucaauuaggu   uuguguaGUCUGACC GAGCCAUUGAAGA aaucauuuguugg     cauug      u
|||||||||||||   ||||||||||||||| ||||||||||||| |||||||||||||     |||||       
cucgguugaucua   aacaCAUUGGACUGG CUCGGUAACUUcu uuaguaaacaacc     gugac      u
             acg               -             c             uauuu     agucca 

Annotation confidence High

Genome context

CM000340.2: 21413342-21413492 [-]

Mature ptc-miR1450-5p

• Accession: MIMAT0055666
• Description: Populus trichocarpa ptc-miR1450-5p mature miRNA
• Sequence: 24 - GUCUGACCCGAGCCAUUGAAGA - 45
• Evidence: experimental ; unknown

Mature ptc-miR1450-3p

• Accession: MIMAT0006012
• Description: Populus trichocarpa ptc-miR1450-3p mature miRNA
• Sequence: 110 - UUCAAUGGCUCGGUCAGGUUAC - 131
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151