Stem-loop ptc-MIR1446d

Accession

MI0007045

Description

Populus trichocarpa ptc-MIR1446d precursor miRNA MIR1446

Gene
family

RF00954; MIR1446

Literature search

1 open access papers mention ptc-MIR1446d
(4 sentences)

Sequence

64039 reads, 1078.0 reads per million, 9 experiments

ccaacuucUUCUGAACUCUCUCCCUCAAcugcuacucuagaucuugccaaucccugucaaguguuucuguguagcaguCGAGGUGAGAGGUUCAGGAAAUGuugg
(((((...((((((((.(((((((((.((((((((.(.((((((((.((.....)).)))).))))..).)))))))).)))).)))))))))))))...)))))

Structure

     uuc        U     -    A        u -u    -    c  a 
ccaac   UUCUGAAC CUCUC CCUC Acugcuac c  agau cuug ca u
|||||   |||||||| ||||| |||| |||||||| |  |||| |||| || c
gguuG   AGGACUUG GAGAG GGAG ugacgaug g  uuug gaac gu c
     UAA        -     U    C        u uc    u    u  c 

Annotation confidence High

Genome context

CM000351.2: 12329283-12329387 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR1446d

Mature ptc-miR1446d-5p

• Accession: MIMAT0006007
• Description: Populus trichocarpa ptc-miR1446d-5p mature miRNA
• Sequence: 9 - UUCUGAACUCUCUCCCUCAA - 28
• Evidence: experimental ; cloned [1]

Mature ptc-miR1446d-3p

• Accession: MIMAT0055662
• Description: Populus trichocarpa ptc-miR1446d-3p mature miRNA
• Sequence: 79 - CGAGGUGAGAGGUUCAGGAAAUG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151