Stem-loop ptc-MIR1446b

Accession

MI0007043

Description

Populus trichocarpa ptc-MIR1446b precursor miRNA MIR1446

Gene
family

RF00954; MIR1446

Literature search

1 open access papers mention ptc-MIR1446b
(4 sentences)

Sequence

59435 reads, 1027.0 reads per million, 9 experiments

ccaauuucUUCUGAACUCUCUCCCUCAAccgccacucuagagguuggcaccuugucaauuguuucuguguagCGGUCGAGGUGAGGGGUUCAGAacauguugg
(((((...((((((((((.(((((((.(((((.((..((((((((((((...)))))))...))))).)).))))).)))).)))))))))))))...)))))

Structure

     uuc          U   -    A     c  uc     ---       c 
ccaau   UUCUGAACUC CUC CCUC Accgc ac  uagag   guuggca  
|||||   |||||||||| ||| |||| ||||| ||  |||||   ||||||| c
gguug   aAGACUUGGG GAG GGAG UGGCg ug  gucuu   uaacugu  
     uac          -   U    C     a  -u     ugu       u 

Annotation confidence Medium

Genome context

CM000348.2: 11669781-11669883 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR1446b

Mature ptc-miR1446b-5p

• Accession: MIMAT0006005
• Description: Populus trichocarpa ptc-miR1446b-5p mature miRNA
• Sequence: 9 - UUCUGAACUCUCUCCCUCAA - 28
• Evidence: experimental ; cloned [1]

Mature ptc-miR1446b-3p

• Accession: MIMAT0055661
• Description: Populus trichocarpa ptc-miR1446b-3p mature miRNA
• Sequence: 73 - CGGUCGAGGUGAGGGGUUCAGA - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151