Stem-loop ptc-MIR1444b

Accession

MI0007038

Description

Populus trichocarpa ptc-MIR1444b precursor miRNA

Literature search

3 open access papers mention ptc-MIR1444b
(117 sentences)

Sequence

51380 reads, 783.0 reads per million, 9 experiments

uuuaucccucgaauaUUGAUCGAAUAUGUAUGAAAUaugaugguuaaauguuucaUUCACAUUCGGUCAACGUUCgagugauaaa
.(((((.(((((((.((((((((((.((.(((((((((.........))))))))).)).)))))))))).))))))).))))).

Structure

u     c       a          A  U         gau 
 uuauc cucgaau UUGAUCGAAU UG AUGAAAUau   g
 ||||| ||||||| |||||||||| || |||||||||   g
 aauag gagCUUG AACUGGCUUA AC Uacuuugua   u
a     u       C          C  U         aau 

Annotation confidence Medium

Genome context

CM000346.2: 11417599-11417683 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR1444b

Mature ptc-miR1444b-5p

• Accession: MIMAT0055658
• Description: Populus trichocarpa ptc-miR1444b-5p mature miRNA
• Sequence: 16 - UUGAUCGAAUAUGUAUGAAAU - 36
• Evidence: experimental ; unknown

Mature ptc-miR1444b-3p

• Accession: MIMAT0006000
• Description: Populus trichocarpa ptc-miR1444b-3p mature miRNA
• Sequence: 56 - UUCACAUUCGGUCAACGUUC - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151