Stem-loop ptc-MIR1444a

Accession

MI0007037

Description

Populus trichocarpa ptc-MIR1444a precursor miRNA

Literature search

4 open access papers mention ptc-MIR1444a
(116 sentences)

Sequence

5095 reads, 82.0 reads per million, 9 experiments

guuuaucacuugAAUGUUGACCGAAUAUGGAUGaaaaguuguuuucuguuuccuuuccUCCACAUUCGGUCAAUGUUCcagugaugagc
((((((((((.(((((((((((((((.((((.((((.(.............).)))).)))).))))))))))))))).))))))))))

Structure

          u               A    U    a uuguu 
guuuaucacu gAAUGUUGACCGAAU UGGA Gaaa g     u
|||||||||| ||||||||||||||| |||| |||| |     u
cgaguaguga CUUGUAACUGGCUUA ACCU cuuu c     c
          c               C    c    c uuugu 

Annotation confidence High

Genome context

CM000344.2: 9316673-9316761 [-]

Mature ptc-miR1444a-5p

• Accession: MIMAT0055657
• Description: Populus trichocarpa ptc-miR1444a-5p mature miRNA
• Sequence: 13 - AAUGUUGACCGAAUAUGGAUG - 33
• Evidence: experimental ; unknown

Mature ptc-miR1444a-3p

• Accession: MIMAT0005999
• Description: Populus trichocarpa ptc-miR1444a-3p mature miRNA
• Sequence: 59 - UCCACAUUCGGUCAAUGUUC - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151