Stem-loop oan-mir-1417

Accession

MI0006957

Description

Ornithorhynchus anatinus oan-mir-1417 precursor miRNA

Sequence

84 reads, 2 reads per million, 5 experiments

ccuccgaaaucagagaaacuGCUCGAUGAUGAUCUUCCuaaaugaugacuuuagcaaaagucaaaaaugacugcguuAUUUCACCGGUUCUGAGAGCAgcucgggaggagggugucugugggugguuagcuggcuucugg
...(((((.((((...(((((((((..(((.((((((((......(((((((....))))))).....(((((.((......)))))))(((((.....))))).)))))))))))..)))))))))..)))).))).))

Structure

ccu  -   a    aga         AU   G        aaaugaugacuuuagcaaaagucaaaaau     c  uA 
   cc gaa ucag   aacuGCUCG  GAU AUCUUCCu                             gacug gu  U
   || ||| ||||   |||||||||  ||| ||||||||                             ||||| ||   
   gg cuu gguc   uuggugggu  cug ugggagga                             UUGGC CA  U
---  u   c    -ga         gu   -        -------------gggcucgACGAGAGUC     -  CU 

Annotation confidence Low

Genome context

Contig146923: 103-242 [-]

Mature oan-miR-1417-5p

• Accession: MIMAT0007274
• Description: Ornithorhynchus anatinus oan-miR-1417-5p mature miRNA
• Sequence: 21 - GCUCGAUGAUGAUCUUCC - 38
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1417-3p

• Accession: MIMAT0007275
• Description: Ornithorhynchus anatinus oan-miR-1417-3p mature miRNA
• Sequence: 78 - AUUUCACCGGUUCUGAGAGCA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004