Stem-loop oan-mir-1409

Accession

MI0006927

Description

Ornithorhynchus anatinus oan-mir-1409 precursor miRNA

Sequence

570 reads, 18 reads per million, 3 experiments

ggcuuugggaggcAAGGGAACUUCUUCUCGCUGAauaaggaaaugccguuuCAGCGCACUCAAGUUCUCAUGCcucccucugcu
(((...((((((((.((((((((.....(((((((...((.....))..))))))).....)))))))).))))))))...)))

Structure

   uuu        A        CUUCU       uaa  a 
ggc   gggaggcA GGGAACUU     CGCUGAa   gg a
|||   |||||||| ||||||||     |||||||   || a
ucg   cccucCGU CUCUUGAA     GCGACuu   cc u
   ucu        A        CUCAC       -ug  g 

Annotation confidence High

Genome context

Contig102: 73900-73983 [-]

Mature oan-miR-1409-5p

• Accession: MIMAT0007226
• Description: Ornithorhynchus anatinus oan-miR-1409-5p mature miRNA
• Sequence: 14 - AAGGGAACUUCUUCUCGCUGA - 34
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1409-3p

• Accession: MIMAT0007227
• Description: Ornithorhynchus anatinus oan-miR-1409-3p mature miRNA
• Sequence: 52 - CAGCGCACUCAAGUUCUCAUGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004