Stem-loop oan-mir-1349

Accession

MI0006743

Description

Ornithorhynchus anatinus oan-mir-1349 precursor miRNA

Sequence

64 reads, 6 reads per million, 1 experiments

ggcaggguguacugacaggaagcGCUGGGCUGAGAGAAGCCGGAacuguggugcuucacuccagccucacucagcccccagucagugcauugcu
((((..((((((((((.((.......((((((((.((.((.(((...((((....))))))).)).)).)))))))))).))))))))))))))

Structure

    gg          a  aagcGCU        A  A  C   acu    u 
ggca  guguacugac gg       GGGCUGAG GA GC GGA   gugg g
||||  |||||||||| ||       |||||||| || || |||   ||||  
ucgu  uacgugacug cc       cccgacuc cu cg ccu   cacu c
    --          a  -------        a  c  a   ---    u 

Annotation confidence Not enough data

Genome context

Contig19080: 2589-2682 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-1349

Mature oan-miR-1349

• Accession: MIMAT0006934
• Description: Ornithorhynchus anatinus oan-miR-1349 mature miRNA
• Sequence: 24 - GCUGGGCUGAGAGAAGCCGGA - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004