Stem-loop oan-mir-144

Accession

MI0006723

Description

Ornithorhynchus anatinus oan-mir-144 precursor miRNA

Sequence

106723 reads, 1930 reads per million, 5 experiments

ggcuuugccugcucugaggcgcccccauuguugcccggggcccuggcggGGAUAUCAUCGUAUACUGUAAGUuugcuaugagacacUACAGUAUAGAUGAUGUACUagcccgggugccccagcccagcaggagcc
((((...(((((((((.(((((((.......((((.((...)).))))(((((((((((.(((((((((.((((......))))..))))))))))))))))).....)))))))))).)))...))))))))))

Structure

    uug      ---   a       ccauuguugcccggggcccuggcg   -----        G         -A    gc 
ggcu   ccugcu   cug ggcgccc                        gGG     AUAUCAUC UAUACUGUA  GUuu  u
||||   ||||||   ||| |||||||                        |||     |||||||| |||||||||  ||||   
ccga   ggacga   gac ccguggg                        ccc     UGUAGUAG AUAUGACAU  caga  a
    ---      ccc   c       ------------------------   gaUCA        -         ca    gu 

Annotation confidence High

Genome context

Contig127412: 245-379 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-144

Mature oan-miR-144-5p

• Accession: MIMAT0006902
• Description: Ornithorhynchus anatinus oan-miR-144-5p mature miRNA
• Sequence: 50 - GGAUAUCAUCGUAUACUGUAAGU - 72
• Evidence: experimental ; Illumina [1]

Mature oan-miR-144-3p

• Accession: MIMAT0006903
• Description: Ornithorhynchus anatinus oan-miR-144-3p mature miRNA
• Sequence: 87 - UACAGUAUAGAUGAUGUACU - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004