Stem-loop oan-mir-219

Accession

MI0006721

Description

Ornithorhynchus anatinus oan-mir-219 precursor miRNA

Sequence

53946 reads, 1296 reads per million, 3 experiments

ggcccaaccgagccagcggggccccgccgcUGAUUGUCCAAACGCAAUUCUUGugcgaguuugcggccaaccgAGAAUUGUGACUGGACAUCUGUggcugggcucccggcgcgacgcgggcc
(((((...((.(((.(.(((((((.(((((.(((.(((((..(((((((((((((((....))))......)))))))))))..)))))))).))))).))))))))))).))....)))))

Structure

     -aac  a   a c       c     U   U     AA           ------    a 
ggccc    cg gcc g ggggccc gccgc GAU GUCCA  CGCAAUUCUUG      ugcg g
|||||    || ||| | ||||||| ||||| ||| |||||  |||||||||||      ||||  
ccggg    gc cgg c ccucggg cggUG CUA CAGGU  GUGUUAAGAgc      gcgu u
     cgca  g   - -       u     U   -     CA           caaccg    u 

Annotation confidence High

Genome context

Contig12675: 21656-21777 [-]

Mature oan-miR-219-5p

• Accession: MIMAT0006899
• Description: Ornithorhynchus anatinus oan-miR-219-5p mature miRNA
• Sequence: 31 - UGAUUGUCCAAACGCAAUUCUUG - 53
• Evidence: experimental ; Illumina [1]

Mature oan-miR-219-3p

• Accession: MIMAT0006900
• Description: Ornithorhynchus anatinus oan-miR-219-3p mature miRNA
• Sequence: 74 - AGAAUUGUGACUGGACAUCUGU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004