Stem-loop bna-MIR169e

Accession

MI0006461

Description

Brassica napus bna-MIR169e precursor miRNA

Literature search

11 open access papers mention bna-MIR169e
(43 sentences)

Sequence

guuucaggcagucuccuuggcuaucuugacaugcuuuuuucuuccauguuauaccuucuuucuuuguauuuuucgaauccaaauaauauuuuuuucuauaaauuuacuacgaaaauccuuuaaacaaucucuaacaaaguauguuauuagaaaacuaccacuuuuugcauuuauuacaaaugcauguacguggugaguguaugcauucuuuagaaggaaaugucaaaggugaauagaagaaucauauuuggUAGCCAAGGAUGACUUGCCUAuuucu
.....((((((((((((((((((((..((.(((..(((((((..(((.((..((.(((((((((((.((((...)))).))).........(((((((..(((.((((.............................)))).)))..)))))))..(((((....(((((((.....))))))).....)))))(((((....)))))...))))))))..))..)).)))...))))))).))).)).)))))))))))).))).)))))......

Structure

-guuuc     -   -            uu  c   cu       -uc   g  au  -c        -----------------------------uuguauuuuucgaauccaaauaauauuu       ua   u    acgaaaauccuuu 
      aggca guc uccuuggcuauc  ga aug  uuuuucu   cau uu  ac  uucuuucu                                                         uuuucua  aau uacu             a
      ||||| ||| ||||||||||||  || |||  |||||||   ||| ||  ||  ||||||||                                                         |||||||  ||| ||||             a
      UCCGU CAG AGGAACCGAUgg  uu uac  aagaaga   gug aa  ug  aaggaaga                                                         aaaagau  uug auga             a
ucuuuA     U   U            -u  a   -u       uaa   g  ac  ua        uuucuuacguaugugaguggugcauguacguaaacauuauuuacguuuuucaccauc       ua   u    aacaaucucuaac 

Annotation confidence Not enough data

Genome context

EM:BH434672: 301-577 [+]

Mature bna-miR169e

• Accession: MIMAT0005616
• Description: Brassica napus bna-miR169e mature miRNA
• Sequence: 252 - UAGCCAAGGAUGACUUGCCUA - 272
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856