miRBase entry: mmu-mir-669h

Stem-loop mmu-mir-669h


Accession
MI0006289
Symbol
MGI: Mir669h
Description
Mus musculus mmu-mir-669h precursor miRNA

Literature search
11 open access papers mention mmu-mir-669h
(15 sentences)

Sequence

1484 reads, 3304 reads per million, 97 experiments
ugugaugcccaccaaaaauAUGCAUGGGUGUAUAGUUGAGUGCauauucauuucucuauaugaaUAUGCAUAUACACACAUGCACAcacacacacacucacacacaggaaugacacucguuuauc
(((((...............((((((.((((((......((((((((((((........)))))))))))))))))).)))))).............))))).....((((((...))))))...

Structure
-----------------------     ugcccaccaaaaauA      G      AGUUGA            uuc 
                       uguga               UGCAUG GUGUAU      GUGCauauucau   u
                       |||||               |||||| ||||||      ||||||||||||    
                       acacu               ACGUAC CACAUA      UACGUAUaagua   c
cuauuugcucacaguaaggacac     --cacacacacacAC      A      ------            uau 


Annotation confidence Not enough data
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Genome context
chr2: 10518155-10518279 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from mmu-mir-669h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669h-5p

Accession MIMAT0005841
Description Mus musculus mmu-miR-669h-5p mature miRNA
Sequence 20 - AUGCAUGGGUGUAUAGUUGAGUGC - 43
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-669h-3p

Accession MIMAT0005842
Description Mus musculus mmu-miR-669h-3p mature miRNA
Sequence 65 - UAUGCAUAUACACACAUGCACA - 86
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102