Stem-loop aga-mir-306

Accession

MI0006243

Description

Anopheles gambiae aga-mir-306 precursor miRNA

Literature search

5 open access papers mention aga-mir-306
(16 sentences)

Sequence

450489 reads, 34971.0 reads per million, 24 experiments

ucacauggUCAGGUACUGGAUGACUCUCAGuuguguguaaaagaugcUGAGGGCCUUCUGGUACCUACCccaguga
((((.(((..((((((((((.(.((((((((..............)))))))).).))))))))))...)))))))

Structure

    a   -UC          U A        ugugug 
ucac ugg   AGGUACUGGA G CUCUCAGu      u
|||| |||   |||||||||| | ||||||||       
agug acc   UCCAUGGUCU C GGGAGUcg      a
    -   CCA          U C        uagaaa 

Annotation confidence Medium

Genome context

ref|NC_064602.1|: 5875477-5875552 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aga-mir-306

Mature aga-miR-306-5p

• Accession: MIMAT0005530
• Description: Anopheles gambiae aga-miR-306-5p mature miRNA
• Sequence: 9 - UCAGGUACUGGAUGACUCUCAG - 30
• Evidence: experimental ; cloned [1]

Mature aga-miR-306-3p

• Accession: MIMAT0053030
• Description: Anopheles gambiae aga-miR-306-3p mature miRNA
• Sequence: 48 - UGAGGGCCUUCUGGUACCUACC - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962