Stem-loop aga-mir-12

Accession

MI0006240

Description

Anopheles gambiae aga-mir-12 precursor miRNA

Literature search

4 open access papers mention aga-mir-12
(12 sentences)

Sequence

60709 reads, 2767.0 reads per million, 24 experiments

ccggggUGAGUAUUACAUCAGGUACUGGUguguaauuuaaacgaccaucggacaugggggcugcccaacuccucuucuguccccggucaagcuauCAGUACUUGUGUUAUACUCUCC
....((.((((((.(((.((((((((((((.((.........((((...(((((.(((((..........)))))..)))))..))))..))))))))))))))))).)))))).))

Structure

ccgg  U      U   U            u  aauuuaaac    auc     -u     cugc 
    gg GAGUAU ACA CAGGUACUGGUg gu         gacc   ggaca  ggggg    c
    || |||||| ||| |||||||||||| ||         ||||   |||||  |||||     
    CC CUCAUA UGU GUUCAUGACuau cg         cugg   ccugu  ucucc    c
----  U      U   -            -  -------aa    -cc     cu     ucaa 

Annotation confidence High

Genome context

ref|NC_064601.1|: 37379265-37379381 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aga-mir-12

Mature aga-miR-12-5p

• Accession: MIMAT0005527
• Description: Anopheles gambiae aga-miR-12-5p mature miRNA
• Sequence: 7 - UGAGUAUUACAUCAGGUACUGGU - 29
• Evidence: experimental ; cloned [1]

Mature aga-miR-12-3p

• Accession: MIMAT0053028
• Description: Anopheles gambiae aga-miR-12-3p mature miRNA
• Sequence: 96 - CAGUACUUGUGUUAUACUCUCC - 117
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962