Stem-loop rno-mir-532

Accession

MI0006154

Description

Rattus norvegicus rno-mir-532 precursor miRNA

Literature search

8 open access papers mention rno-mir-532
(12 sentences)

Sequence

138990 reads, 125 reads per million, 491 experiments

uuuucucuucCAUGCCUUGAGUGUAGGACUGUugacaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagagcaag
..(((((((.((.((((((.((((.(((..(((((....))))).....))).)))).)))))).)).)))))))....

Structure

--uu       c  U      A    A   ---CU     c 
    uucucuu CA GCCUUG GUGU GGA     GUuga a
    ||||||| || |||||| |||| |||     |||||  
    gagaggA GU CGGAAC CACA CCU     uaauu u
gaac       C  U      C    C   CCcau     c 

Annotation confidence High

Genome context

chrX: 16109870-16109948 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-532

Mature rno-miR-532-5p

• Accession: MIMAT0005322
• Description: Rattus norvegicus rno-miR-532-5p mature miRNA
• Sequence: 11 - CAUGCCUUGAGUGUAGGACUGU - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-532-3p

• Accession: MIMAT0005323
• Description: Rattus norvegicus rno-miR-532-3p mature miRNA
• Sequence: 48 - CCUCCCACACCCAAGGCUUGCA - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249