Stem-loop rno-mir-425

Accession

MI0006146

Description

Rattus norvegicus rno-mir-425 precursor miRNA

Literature search

4 open access papers mention rno-mir-425
(7 sentences)

Sequence

229163 reads, 226 reads per million, 495 experiments

agugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaagaagccAUCGGGAAUAUCGUGUCCGCCcagugcucuuu
((.((.((((...((((((((...(((((....((((............)))))))))..))))))))...)))).)).))..

Structure

--  u  u    AAU        CAC     UUGA    gcacc 
  ag gc uugg   GACACGAU   UCCCG    gugg     c
  || || ||||   ||||||||   |||||    ||||      
  uc cg gacC   CUGUGCUA   AGGGC    UAcc     a
uu  u  u    CGC        -UA     ----    gaaga 

Annotation confidence High

Genome context

chr8: 117354821-117354903 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-425

Mature rno-miR-425-5p

• Accession: MIMAT0005314
• Description: Rattus norvegicus rno-miR-425-5p mature miRNA
• Sequence: 11 - AAUGACACGAUCACUCCCGUUGA - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-425-3p

• Accession: MIMAT0017306
• Description: Rattus norvegicus rno-miR-425-3p mature miRNA
• Sequence: 52 - AUCGGGAAUAUCGUGUCCGCC - 72
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249