Stem-loop rno-mir-423

Accession

MI0006145

Description

Rattus norvegicus rno-mir-423 precursor miRNA

Literature search

13 open access papers mention rno-mir-423
(125 sentences)

Sequence

424557 reads, 417 reads per million, 505 experiments

gaaguuaggcUGAGGGGCAGAGAGCGAGACUUUUcuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccu
(((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))..

Structure

--     u            -AG   G    A     cua 
  gaagu aggcUGAGGGGC   AGA CGAG CUUUU   u
  ||||| ||||||||||||   ||| |||| |||||   u
  cuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
uc     u            GAG   G    -     ccu 

Annotation confidence High

Genome context

chr10: 63098366-63098444 [+]

Mature rno-miR-423-5p

• Accession: MIMAT0017305
• Description: Rattus norvegicus rno-miR-423-5p mature miRNA
• Sequence: 11 - UGAGGGGCAGAGAGCGAGACUUUU - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-423-3p

• Accession: MIMAT0005313
• Description: Rattus norvegicus rno-miR-423-3p mature miRNA
• Sequence: 47 - AGCUCGGUCUGAGGCCCCUCAGU - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249