Stem-loop rno-mir-743b

Accession

MI0006115

Description

Rattus norvegicus rno-mir-743b precursor miRNA

Literature search

4 open access papers mention rno-mir-743b
(11 sentences)

Sequence

24781 reads, 617 reads per million, 142 experiments

ugcagugcugUGUUCAGACUGGUGUCCAUCAUgugaaauauuuguGAAAGACACCAUACUGAAUAGAguaaggcuca
.((..((((.(((((((..(((((((..(((((.........)))))..)))))))..))))))).))))..))...

Structure

--u  ag    g       AC       CA     uga 
   gc  ugcu UGUUCAG  UGGUGUC  UCAUg   a
   ||  |||| |||||||  |||||||  |||||   a
   cg  augA AUAAGUC  ACCACAG  AGugu   u
acu  ga    G       AU       AA     uua 

Annotation confidence High

Genome context

chrX: 151253318-151253394 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-743b

Mature rno-miR-743b-5p

• Accession: MIMAT0017288
• Description: Rattus norvegicus rno-miR-743b-5p mature miRNA
• Sequence: 11 - UGUUCAGACUGGUGUCCAUCAU - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-743b-3p

• Accession: MIMAT0005280
• Description: Rattus norvegicus rno-miR-743b-3p mature miRNA
• Sequence: 46 - GAAAGACACCAUACUGAAUAGA - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249