Accession
MI0006010
Description
Physcomitrella patens
ppt-MIR1051 precursor miRNA
Sequence
uuggcgucucgucuugcgccgauaccuuaacguGGUUCAAGUGAACAGGAAGAgguuugcgagaauguuguucugaaagaauuaaccuggacagaguagcgcagaaugcaacacuaggguuucggaguaucauucuaacaaaucucUUCCUGUCUACUUGAAGCCACaauaaggcuuggugccugcuaugagguaag
(((((((........)))))))(((((((..((((((((((((.(((((((((((((((..((((((.((((((((((.......(((((.....(((........)))....))))).)))))))))).))))))..))))))))))))))).)))))).))))))....((((.....))))....)))))))..
(((((((........)))))))(((((((..((((((((((((.(((((((((((((((..((((((.((((((((((.......(((((.....(((........)))....))))).)))))))))).))))))..))))))))))))))).)))))).))))))....((((.....))))....)))))))..
Structure
uuggcgucucgucuugcgccga -------------------ac - A cg u gaauuaa acaga gcg
uaccuua guGGUU CAAGUG ACAGGAAGAgguuug agaaug uguucugaaa ccugg gua c
||||||| |||||| |||||| ||||||||||||||| |||||| |||||||||| ||||| |||
auggagu CACCGA GUUCAU UGUCCUUcucuaaac ucuuac augaggcuuu ggauc cgu a
--------------------ga aucguccgugguucggaauaa A C aa u ------g -acaa aag
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr12: 5498625-5498821 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1051
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1051-5p
| Accession | MIMAT0005167 |
| Description | Physcomitrella patens ppt-miR1051-5p mature miRNA |
| Sequence | 34 - GGUUCAAGUGAACAGGAAGA - 53 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1051-3p
| Accession | MIMAT0005168 |
| Description | Physcomitrella patens ppt-miR1051-3p mature miRNA |
| Sequence | 147 - UUCCUGUCUACUUGAAGCCAC - 167 |
| Evidence |
experimental
454 [1] |
References
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