Stem-loop dme-mir-1001

Accession

MI0005863

Description

Drosophila melanogaster dme-mir-1001 precursor miRNA

Gene family

MIPF0001048; mir-1001

Literature search

3 open access papers mention dme-mir-1001
(4 sentences)

Sequence

8803 reads, 150 reads per million, 40 experiments

aagcuggccugucccUGGGUAAACUCCCAAGGAUCAgguggagauugaaucccgAUCCUUGGGUUUCUGCUCUCGGgcaaggucaguagu
..((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))...

Structure

-aa        -    cU     AACU          A  uggag 
   gcuggccu gucc  GGGUA    CCCAAGGAUC gg     a
   |||||||| ||||  |||||    |||||||||| ||      
   ugacugga cgGG  CUCGU    GGGUUCCUAg cc     u
uga        a    CU     CUUU          c  uaagu 

Annotation confidence Not enough data

Genome context

chr3R: 27642466-27642555 [-]

Mature dme-miR-1001-5p

• Accession: MIMAT0005521
• Description: Drosophila melanogaster dme-miR-1001-5p mature miRNA
• Sequence: 16 - UGGGUAAACUCCCAAGGAUCA - 36
• Evidence: experimental ; 454 [1]

Mature dme-miR-1001-3p

• Accession: MIMAT0020901
• Description: Drosophila melanogaster dme-miR-1001-3p mature miRNA
• Sequence: 55 - AUCCUUGGGUUUCUGCUCUCGG - 76
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864