Stem-loop dme-mir-962

Accession

MI0005817

Description

Drosophila melanogaster dme-mir-962 precursor miRNA

Gene family

MIPF0001011; mir-962

Literature search

1 open access papers mention dme-mir-962
(5 sentences)

Sequence

1140 reads, 216 reads per million, 41 experiments

gauggggcacucaggcuAUAAGGUAGAGAAAUUGAUGCUGUCuacacuauucagACUUCAGUUUCAUUACCUUUCAauuuguuugcccccau
...((((((..((((....(((((((.((((((((.((((...........))).).)))))))).)))))))....))))..))))))...

Structure

gau      cu    cuAU       A        U -   UCua 
   ggggca  cagg    AAGGUAG GAAAUUGA G CUG    c
   ||||||  ||||    ||||||| |||||||| | |||    a
   ccccgu  guuu    UUCCAUU CUUUGACU C gac    c
uac      uu    aACU       A        U A   uuau 

Annotation confidence High

Genome context

chr2L: 5641298-5641389 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dme-mir-962

Mature dme-miR-962-5p

• Accession: MIMAT0005476
• Description: Drosophila melanogaster dme-miR-962-5p mature miRNA
• Sequence: 18 - AUAAGGUAGAGAAAUUGAUGCUGUC - 42
• Evidence: experimental ; 454 [1]

Mature dme-miR-962-3p

• Accession: MIMAT0020857
• Description: Drosophila melanogaster dme-miR-962-3p mature miRNA
• Sequence: 55 - ACUUCAGUUUCAUUACCUUUCA - 76
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864