Stem-loop dme-mir-954

Accession

MI0005806

Description

Drosophila melanogaster dme-mir-954 precursor miRNA

Literature search

2 open access papers mention dme-mir-954
(2 sentences)

Sequence

1878 reads, 143 reads per million, 49 experiments

uacaaacacaagauuuUCUGGGUGUUGCGUUGUGUGUaccuguguacaggcguaUUCACAUGCAACAUCCCUUACaucuugcuugau
........((((((.....(((((((((((.(((.(((((((....))))..))).)))))))))))))).....))))))......

Structure

uacaaaca      uuUCU           U   U   --    u 
        caagau     GGGUGUUGCGU GUG GUa  ccug g
        ||||||     ||||||||||| ||| |||  ||||  
        guucua     CCUACAACGUA CAC Uau  ggac u
--uaguuc      CAUUC           -   U   gc    a 

Annotation confidence Not enough data

Genome context

chr4: 626126-626212 [+]

Mature dme-miR-954-5p

• Accession: MIMAT0005465
• Description: Drosophila melanogaster dme-miR-954-5p mature miRNA
• Sequence: 17 - UCUGGGUGUUGCGUUGUGUGU - 37
• Evidence: experimental ; 454 [1]

Mature dme-miR-954-3p

• Accession: MIMAT0020846
• Description: Drosophila melanogaster dme-miR-954-3p mature miRNA
• Sequence: 55 - UUCACAUGCAACAUCCCUUAC - 75
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864