Stem-loop pta-MIR952b

Accession

MI0005803

Description

Pinus taeda pta-MIR952b precursor miRNA

Sequence

gaacuacucgcgcauugAACUGAGAAUGCCAUUGGUGgaguaaguacgucaagggacgaaacagaauuaauuuugauuaacauuuuauuaaccuucaacucuaccuuggcuuauggaaguucgugaaggucacagggcaaggacuagucugcugguugcugccacagucaauugggacucucccaaguuauucucagcugcagcauuccgaaguuauucaauguugcagccgagaauauuauggggacaguccauuggucacaacagccagccgauuacaccuuguaugagugccccaacuggugugaguuucaugaacugccagaagccaaaacagaguugcaacgcuaauaaaacauuaugcaaaauuaauuccauuuuguugguugacauacuucauccgcuaauagcacgcuuaguucaauuugcuaaugguuc
((((((...(((.(((((((((((..(((.(((((((((..(((((.(((((..(((((((..((((((((((((..(((..((((((((.(.(((((((((...(((((((.(((.(((((((((((.((((...((((((..(((((.((((((((.((..((...((((..(((((.((((....(((((((.(((((((((((..(((....)))))))))))))).))))))).....)))).)))))))))))..)).)))))))).)))))..))))))((.(((......))).)))))).))))))))))).))).)))))))...))))))).)).).))))))))..)))..))))))))))))..)))))))..))))).)))))..))))))))).)))..))))))))))).)))...))))))

Structure

      cuc   c           AA   C         gu     c     gg       ca            au   ca        a c  -       acc       a   a           g    ---------------agg      ac     u        c  cc  agu    ug     c    -aagu       a           cc   g 
gaacua   gcg auugAACUGAG  UGC AUUGGUGga  aagua gucaa  gacgaaa  gaauuaauuuug  uaa  uuuuauua c uu caacucu   uuggcuu ugg aguucgugaag ucac                  gcaagg  uaguc gcugguug ug  ac   caau  ggacu uccc     uauucuc gcugcagcauu  gaa u
||||||   ||| |||||||||||  ||| |||||||||  ||||| |||||  |||||||  ||||||||||||  |||  |||||||| | || |||||||   ||||||| ||| ||||||||||| ||||                  ||||||  ||||| |||||||| ||  ||   ||||  ||||| ||||     ||||||| |||||||||||  |||  
cuuggu   cgu uaacuugauuc  acg uaaucgccu  uucau caguu  uuguuuu  cuuaauuaaaac  auu  aaaauaau g aa guugaga   aaccgaa acc ucaaguacuuu agug                  uguucc  auuag cgaccgac ac  ug   guua  ccuga aggg     auaagag cgacguuguaa  cuu u
      aau   u           gc   a         ac     a     gg       ac            gu   ac        c c  c       caa       g   g           g    uggucaaccccgugagua      ac     c        a  ac  ---    --     c    guauu       c           --   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR952b

• Accession: MIMAT0005014
• Description: Pinus taeda pta-miR952b mature miRNA
• Sequence: 18 - AACUGAGAAUGCCAUUGGUG - 37
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098