Stem-loop pta-MIR952a

Accession

MI0005802

Description

Pinus taeda pta-MIR952a precursor miRNA

Sequence

gaaccaguagcguauugAACAGAGCAUGCCGUUGGUUgaguaaguacgucaagggacgaaacagaauuaauuuucauuaacauuuuauuaaccuucaacucugccuuggccuagggcaguuccugaaggucacauugacuggggcgugauacaacgcguaguccgcugguugcugcgaccauugggacucccccagccuauucucagcugcaacauucgcaaguuauuuacaguguugcagccgagaauaaaaugggaagagucaaaagcguggcaacaaccagccaauuacgcuuuguaucagcgccccaacuggugugagcuucgggaauugccauaugccaagccagauuugcaugcuaauaaaacauuauucgaaauuaauugcguuuuguugguugacagacuuccuccaccaaugacacgcucaguucaauuugcugaugguuc
((((((.(((((.(((((((.((((.((.(((((((.(((.((((..(((((..((((((((..((((((((((...(((..((((((((.(...(((.((((.((((((.((.((((((((((((((.((((((((..(((((((((((((((.(((((((..((((((((.(((.((..((..(((((.((((...(((((((.(((((((((((..............))))))))))).)))))))...))))..)))))..))..)).))).))))))))..))))))).)))))))).)))))))..)))))))).)))))))))))))).)).)))))).)))).)))...).))))))))..)))...))))))))))..))))))))..)))))..)))).))).))))))).)).)))).))))))).))))).))))))

Structure

      g     u       A    A  C       U   u    ac     gg        ag          cau   ca        a cuu   c    c      c  g              g        ac       -        c       cc        c   g  ca  gg     -c    gcc       a           cgcaag 
gaacca uagcg auugAAC GAGC UG CGUUGGU gag aagu  gucaa  gacgaaac  aauuaauuuu   uaa  uuuuauua c   caa ucug cuuggc ua ggcaguuccugaag ucacauug  uggggcg ugauacaa gcguagu  gcugguug ugc ac  uu  gacuc  ccca   uauucuc gcugcaacauu      u
|||||| ||||| ||||||| |||| || ||||||| ||| ||||  |||||  ||||||||  ||||||||||   |||  |||||||| |   ||| |||| |||||| || |||||||||||||| ||||||||  ||||||| |||||||| |||||||  |||||||| ||| ||  ||  |||||  ||||   ||||||| |||||||||||       
cuuggu gucgu uaacuug cucg ac guaacca cuc uuca  caguu  uuguuuug  uuaauuaaag   auu  aaaauaau g   guu agac gaaccg au ccguuaagggcuuc aguguggu  accccgc acuauguu cgcauua  cgaccaac acg ug  aa  cugag  gggu   auaagag cgacguuguga      u
      a     u       a    c  a       c   c    ga     gg        cg          cuu   ac        c uac   u    c      u  a              g        ca       g        u       ac        a   g  cg  aa     aa    aaa       c           cauuua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR952a

• Accession: MIMAT0005013
• Description: Pinus taeda pta-miR952a mature miRNA
• Sequence: 18 - AACAGAGCAUGCCGUUGGUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098