Stem-loop pta-MIR948

Accession

MI0005797

Description

Pinus taeda pta-MIR948 precursor miRNA

Sequence

aagucaugaaaUCAGGCUGUGUGGGAUCCGGuaacgccacagaguaagauagcagcgucaaagugacuguaggcauugguggauaaagugaagcgguauugaugaggccucacauuguccaccgaugccuacagccacuuugacguucucaucugauuuuaugacggccucacuuccuccgccaaugccugaggcggugucaucuguuuuugcggcauuaccggauccuacaaacccuguuuucauggguu
((.((((((((.((((...(((((((((((((((.(((.((((...((((((.((((((((((((.((((((((((((((((((((.((((.((............)).)))).)))))))))))))))))))).)))))))))))))).))))........(((((...((((.((((.((....))..)))).))))....))))))))).))).)))))))))))))))...)))).)))))))).))

Structure

  g        U    CUG               c   a    ---------------------------------------------------gua    -  c            a                    a    a  gguau 
aa ucaugaaa CAGG   UGUGGGAUCCGGuaa gcc caga                                                      agau ag agcgucaaagug cuguaggcauugguggauaa guga gc     u
|| |||||||| ||||   ||||||||||||||| ||| ||||                                                      |||| || |||||||||||| |||||||||||||||||||| |||| ||      
uu gguacuuu gucc   acauccuaggccauu cgg guuu                                                      ucua uc uugcaguuucac gacauccguagccaccuguu cacu cg     g
  g        u    caa               a   c    uugucuacuguggcggaguccguaaccgccuccuucacuccggcaguauuuuag    c  -            c                    a    c  gagua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR948

• Accession: MIMAT0005008
• Description: Pinus taeda pta-miR948 mature miRNA
• Sequence: 12 - UCAGGCUGUGUGGGAUCCGG - 31
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098