Accession
MI0005794
Description
Pinus taeda
pta-MIR946a precursor miRNA
Sequence
cagaguguauggaUGUGGAUAGAGAAGGGUUAGUaaacgguagaaaacccauuuauuguaugucauuggcuguucgagauuaagcagcuguaauucgauggccauacucauuaaauggguuggcuguuugcucuguacCAGCCCUUCUCCUAUCCACAAuuguacuaguuug
((((.(((((((.((((((((((((((((((((((((((((....((((((((((..(((((((((((((((((........)))))).......)))))).)))))....)))))))))).)))))))))).......))))))))).))))))))).)))))).).))))
((((.(((((((.((((((((((((((((((((((((((((....((((((((((..(((((((((((((((((........)))))).......)))))).)))))....)))))))))).)))))))))).......))))))))).))))))))).)))))).).))))
Structure
g - a - ------- agaa --uu - ------- cga
caga u guaugg UGUGGAUAG AGAAGGGUU AGUaaacggu aacccauuua guaug ucauug gcuguu g
|||| | |||||| ||||||||| ||||||||| |||||||||| |||||||||| ||||| |||||| ||||||
guuu a cauguu ACACCUAUC UCUUCCCGA ucguuugucg uuggguaaau cauac gguagc cgacga a
g u A C Ccauguc ---g uacu c uuaaugu auu
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The cloned miR946 sequences in [1] has an additional 3' A residue, which is incompatible with the genomic sequence and hairpin shown here.
Genome context
Unknown
Database links
Mature pta-miR946a-5p
| Accession | MIMAT0006791 |
| Description | Pinus taeda pta-miR946a-5p mature miRNA |
| Sequence | 14 - UGUGGAUAGAGAAGGGUUAGU - 34 |
| Evidence |
experimental
454 [2] |
Mature pta-miR946a-3p
| Accession | MIMAT0005005 |
| Description | Pinus taeda pta-miR946a-3p mature miRNA |
| Sequence | 139 - CAGCCCUUCUCCUAUCCACAA - 159 |
| Evidence |
experimental
cloned [1] |
References
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