Stem-loop bna-MIR396a

Accession

MI0005773

Description

Brassica napus bna-MIR396a precursor miRNA

Literature search

6 open access papers mention bna-MIR396a
(23 sentences)

Sequence

UUCCACAGCUUUCUUGAACUUucuuuuucauuucccuuauuuuasagcgaaauuaaauaacuaaaaaucucuaacauuuaacacucuasaaaaaaaaagcucaasaaagcuguggga
((((((((((((.((((.((((.(((((.(((((.((........)).)))))(((((.................))))).........))))).)))).)))).))))))))))))

Structure

            C    A    c     -----------------------------------c     c  uau 
UUCCACAGCUUU UUGA CUUu uuuuu                                    auuuc cu   u
|||||||||||| |||| |||| |||||                                    ||||| ||    
agggugucgaaa aacu gaaa aaaaa                                    uaaag ga   u
            s    c    a     saucucacaauuuacaaucucuaaaaaucaauaaau     c  sau 

Annotation confidence Not enough data

Genome context

EM:BQ704984: 390-506 [-]

Mature bna-miR396a

• Accession: MIMAT0004448
• Description: Brassica napus bna-miR396a mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUU - 21
• Evidence: experimental ; RTPCR [1]

References

1. PubMed ID: 17367786
   Computational identification of novel microRNAs and targets in Brassica napus
   "Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM"
   "FEBS Lett (2007) 581:1464-1474