Stem-loop ame-mir-34

Accession

MI0005739

Description

Apis mellifera ame-mir-34 precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

7 open access papers mention ame-mir-34
(24 sentences)

Sequence

uuuuuuugcgauuggcauguUGGCAGUGUUGUUAGCUGGUUGuguggcuacauuguauauacgaccgcuaucggcacugcaauuaugacgaucguagggu
...(((((((((((.((((...(((((((((.((((.(((((((((((......)).))))))))))))).)))))))))...)))).))))))))))).

Structure

uuu           g    uUG         U    U         -  ua 
   uuuugcgauug caug   GCAGUGUUG UAGC GGUUGugug gc  c
   ||||||||||| ||||   ||||||||| |||| ||||||||| ||   
   gggaugcuagc guau   cgucacggc aucg ccagcauau ug  a
--u           a    uaa         u    -         a  uu 

Annotation confidence Not enough data

Genome context

CM000058.5: 6962684-6962783 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-34

Mature ame-miR-34-5p

• Accession: MIMAT0004430
• Description: Apis mellifera ame-miR-34-5p mature miRNA
• Sequence: 21 - UGGCAGUGUUGUUAGCUGGUUG - 42
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670