Stem-loop ame-mir-10

Accession

MI0005727

Description

Apis mellifera ame-mir-10 precursor miRNA

Literature search

9 open access papers mention ame-mir-10
(36 sentences)

Sequence

542381 reads, 7391.0 reads per million, 24 experiments

cccaguuaaugcucuacaucUACCCUGUAGAUCCGAAUUUGUuugauaagaggcgaCAAAUUCGGUUCUAGAGAGGUUUguguggugcauacagagcuac
........((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).))))..........

Structure

--cccaguua    u      cU   -  G    U           ugau 
          augc cuacau  ACC CU UAGA CCGAAUUUGUu    a
          |||| ||||||  ||| || |||| |||||||||||    a
          uacg ggugug  UGG GA AUCU GGCUUAAACag    g
caucgagaca    u      UU   A  G    U           cgga 

Annotation confidence High

Genome context

CM000069.5: 2496380-2496479 [-]

Mature ame-miR-10-5p

• Accession: MIMAT0004419
• Description: Apis mellifera ame-miR-10-5p mature miRNA
• Sequence: 21 - UACCCUGUAGAUCCGAAUUUGU - 42
• Evidence: experimental ; RTPCR [1], Illumina [2]

Mature ame-miR-10-3p

• Accession: MIMAT0053059
• Description: Apis mellifera ame-miR-10-3p mature miRNA
• Sequence: 57 - CAAAUUCGGUUCUAGAGAGGUUU - 79
• Evidence: experimental ; RTPCR [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670