Stem-loop rrv-miR-rR1-6

Accession

MI0005723

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-6 precursor miRNA

Sequence

gcggugaacCGCGGAAAGGUGUGCACAUCGUAaaaucacuacugCGAUGUACGCCCUUUCGCAGUuuacugc
(((((((((.((((((.((((((((..(((((..........))))))))))))).)))))).)))))))))

Structure

         C      A        CA     aaau 
gcggugaac GCGGAA GGUGUGCA  UCGUA    c
||||||||| |||||| ||||||||  |||||     
cgucauuUG CGCUUU CCGCAUGU  AGCgu    a
         A      C        --     cauc 

Annotation confidence Not enough data

Genome context

AF210726.1: 111174-111245 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-6

Mature rrv-miR-rR1-6-5p

• Accession: MIMAT0004413
• Description: Rhesus monkey rhadinovirus rrv-miR-rR1-6-5p mature miRNA
• Sequence: 10 - CGCGGAAAGGUGUGCACAUCGUA - 32
• Evidence: experimental ; cloned [1]

Mature rrv-miR-rR1-6-3p

• Accession: MIMAT0004414
• Description: Rhesus monkey rhadinovirus rrv-miR-rR1-6-3p mature miRNA
• Sequence: 45 - CGAUGUACGCCCUUUCGCAGU - 65
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17451774
   Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
   "Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
   "Virology (2007) 364:21-27