Stem-loop cre-MIR915

Accession

MI0005708

Description

Chlamydomonas reinhardtii cre-MIR915 precursor miRNA

Literature search

1 open access papers mention cre-MIR915
(1 sentences)

Sequence

caacgcugccgcggaggcgcucggcguggacggggacgagcucggcgaccuucucuuuacgcugucgaaacuaucggaggagcagcucaaauucuuuccaauagccgcUGGCAAUAAGGCAAUCGUUGCguuuggguccucucgcagacugcgcaacgcaacgauugccuuauugucagcgccuaucggaaagaauucgagcugccccuccgauaguuccgacagcguaaaaagaaggucgccgagcucggugcccguccacgccgagcccuccgcggcagcguug
(((((((((((((((((.((((((((((((((((.(((((((((((((((((((.((((((((((((.((((((((((((.(((((((.((((((((((.((((.(((((((((((((((((((((((((((.(.((..(((...)))..)).)))))))))))))))))))))))))))).)))).)))))))))).))))))).)))))))))))).)))))))))))).))))))))))))))))).)).)))))))))))))))))))))))))))))))))

Structure

                 c                g  -                 c            a            a       a          a    c                           u g  cc   c 
caacgcugccgcggagg gcucggcguggacggg ac gagcucggcgaccuucu uuuacgcugucg aacuaucggagg gcagcuc aauucuuucc auag cgcUGGCAAUAAGGCAAUCGUUGCguu g gu  ucu  
||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| | ||  ||| g
guugcgacggcgccucc cgagccgcaccugccc ug cucgagccgcuggaaga aaaugcgacagc uugauagccucc cgucgag uuaagaaagg uauc gcgacuguuauuccguuagcaacgcaa c cg  aga  
                 -                g  g                 a            c            c       c          c    c                           - g  uc   c 

Annotation confidence Not enough data

Genome context

scaffold_23: 1270775-1271060 [-]

Mature cre-miR915

• Accession: MIMAT0004398
• Description: Chlamydomonas reinhardtii cre-miR915 mature miRNA
• Sequence: 109 - UGGCAAUAAGGCAAUCGUUGC - 129
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203