Accession
MI0005701
Description
Chlamydomonas reinhardtii
cre-MIR908 precursor miRNA
Sequence
guggguuuUGAGAAGAUGCGGUCCGUUGGCuauaauguugacagaccacccgcucccuuacugacgcaguUGACGCGUUUGAUAGCAGGAUCauaguacgggaccaguuccccuaccaacuggucccguaaccacuaugauccugcuaucaaaggcgucaACUACGUCAAUAAGGCAGCggguggucaauauacauuauugccaacggaccgguucuccucaaaugucac
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.((((((((((((((((((((((((((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).))))))))))))..))).))))))..))))
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.((((((((((((((((((((((((((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).))))))))))))..))).))))))..))))
Structure
gu A UG u ugaca c c c G ---- ccc
gugg uuUGAG AGA CGGUCCGUUGGC auaaugu gaccacccgcu ccuua ugacg aguUGACGC UUUGAUAGCAGGAUCauagu acgggaccaguu c
|||| |||||| ||| |||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||
cacu aaacuc ucu gccaggcaaccg uauuaca cuggugggCGA GGAAU ACUGC UCAacugcg aaacuaucguccuaguauca ugcccuggucaa u
gu c ug u uauaa C A A g ccaa cca
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Zhao et al. identify a mature miRNA product from the 5' arm of the hairpin precursor, and named it miR908 [1]. Molner et al. identify 3 mature products, and suggest that an alternative 5' product is the predominant one, named cre-miR908.1 here [2]. The Zhao et al. product is renamed miR908.2 here.
Genome context
scaffold_213: 20092-20321 [+]
Database links
Mature cre-miR908.1
| Accession | MIMAT0004965 |
| Description | Chlamydomonas reinhardtii cre-miR908.1 mature miRNA |
| Sequence | 9 - UGAGAAGAUGCGGUCCGUUGGC - 30 |
| Evidence |
experimental
cloned [2] |
Mature cre-miR908.2
| Accession | MIMAT0004390 |
| Description | Chlamydomonas reinhardtii cre-miR908.2 mature miRNA |
| Sequence | 71 - UGACGCGUUUGAUAGCAGGAUC - 92 |
| Evidence |
experimental
cloned [1-2] |
Mature cre-miR908.3
| Accession | MIMAT0004966 |
| Description | Chlamydomonas reinhardtii cre-miR908.3 mature miRNA |
| Sequence | 161 - ACUACGUCAAUAAGGCAGC - 179 |
| Evidence |
experimental
cloned [2] |
References
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