Stem-loop cre-MIR906

Accession

MI0005699

Description

Chlamydomonas reinhardtii cre-MIR906 precursor miRNA

Literature search

1 open access papers mention cre-MIR906
(36 sentences)

Sequence

175601 reads, 11329.0 reads per million, 51 experiments

ggccuacauacgguuggugggcgugaucagcAGGGGGAAGCUUUAUCGGAAUucgaugugcagggcgugugggcacaugcccugcacaucgauuUCCGAUAAAGCUUCCCCCUGCugaucacgcccaccaaccguauguaggcc
(((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((....)))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                   U                  g 
ggccuacauacgguuggugggcgugaucagcAGGGGGAAGCUUUAUCGGAA ucgaugugcagggcgugu g
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
ccggauguaugccaaccacccgcacuaguCGUCCCCCUUCGAAAUAGCCUu agcuacacgucccguaca g
                                                   u                  c 

Annotation confidence High

Genome context

scaffold_1: 186394-186537 [+]

Mature cre-miR906-5p

• Accession: MIMAT0004387
• Description: Chlamydomonas reinhardtii cre-miR906-5p mature miRNA
• Sequence: 32 - AGGGGGAAGCUUUAUCGGAAU - 52
• Evidence: experimental ; cloned [1]

Mature cre-miR906-3p

• Accession: MIMAT0004388
• Description: Chlamydomonas reinhardtii cre-miR906-3p mature miRNA
• Sequence: 95 - UCCGAUAAAGCUUCCCCCUGC - 115
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203