Stem-loop mtr-MIR164c

Accession

MI0005616

Description

Medicago truncatula mtr-MIR164c precursor miRNA

Literature search

4 open access papers mention mtr-MIR164c
(56 sentences)

Sequence

454821 reads, 3790.0 reads per million, 111 experiments

cuuguUGGAGAAGCAGGGCACGUGCAaccguagaucucucucaaacuucaaucucauuuugCACGUGCUCCACUUUUCCAAcuuga
(..((((((((((..((((((((((((....((((...............))))....))))))))))))..))))))))))..).

Structure

- uu          CA            ccgu    cucucu 
 c  guUGGAGAAG  GGGCACGUGCAa    agau      c
 |  ||||||||||  ||||||||||||    ||||      a
 g  cAACCUUUUC  CUCGUGCACguu    ucua      a
a uu          AC            uuac    acuuca 

Annotation confidence High

Genome context

chr7: 36370118-36370203 [-]

Mature mtr-miR164c-5p

• Accession: MIMAT0011102
• Description: Medicago truncatula mtr-miR164c-5p mature miRNA
• Sequence: 6 - UGGAGAAGCAGGGCACGUGCA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR164c-3p

• Accession: MIMAT0054785
• Description: Medicago truncatula mtr-miR164c-3p mature miRNA
• Sequence: 62 - CACGUGCUCCACUUUUCCAA - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: