Stem-loop mtr-MIR164b

Accession

MI0005612

Description

Medicago truncatula mtr-MIR164b precursor miRNA

Literature search

4 open access papers mention mtr-MIR164b
(56 sentences)

Sequence

462747 reads, 3853.0 reads per million, 111 experiments

caagaUGGAGAAGCAGGGCACGUGCAauacuaacucaugaacauacacacaugauggaagugaauacaaagagaaucuacauucucuuauguuucauuuuuuuaauugaguuaguucuUCAUGUGCCCCUCUUCCCCAUcauga
((.(((((.((((..(((((((((....(((((((((..................(((((((((.(((((((((((....)))))))).)))))))))))).....)))))))))....)))))))))..)))).))))).)).

Structure

-  a     A    CA         CAau         ugaacauacacacaugau         u   -        c 
 ca gaUGG GAAG  GGGCACGUG    acuaacuca                  ggaagugaa aca aagagaau u
 || ||||| ||||  |||||||||    |||||||||                  ||||||||| ||| ||||||||  
 gu cUACC CUUC  CCCGUGUAC    ugauugagu                  uuuuuacuu ugu uucucuua a
a  a     C    UC         Uucu         -------------uaauu         -   a        c 

Annotation confidence High

Genome context

chr7: 19001248-19001391 [+]

Mature mtr-miR164b-5p

• Accession: MIMAT0011098
• Description: Medicago truncatula mtr-miR164b-5p mature miRNA
• Sequence: 6 - UGGAGAAGCAGGGCACGUGCA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR164b-3p

• Accession: MIMAT0054782
• Description: Medicago truncatula mtr-miR164b-3p mature miRNA
• Sequence: 119 - UCAUGUGCCCCUCUUCCCCAU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: