Stem-loop mtr-MIR399m

Accession

MI0005608

Description

Medicago truncatula mtr-MIR399m precursor miRNA

Literature search

8 open access papers mention mtr-MIR399m
(25 sentences)

Sequence

1933 reads, 20.0 reads per million, 98 experiments

agucauaGGGCAUGUCUCUAUUGGCAGGugauauagugauauggcucuagaaauucacuUGCCAAAGGAGAGCUGCCCUAugaau
..((((((((((..(((((.(((((((((((..(((.(......).))).....))))))))))).)))))..))))))))))..

Structure

ag          UG     A           ---ua   u au 
  ucauaGGGCA  UCUCU UUGGCAGGuga     uag g  a
  ||||||||||  ||||| |||||||||||     ||| |   
  aguAUCCCGU  AGAGG AACCGUucacu     auc c  u
ua          CG     A           uaaag   u gg 

Annotation confidence High

Genome context

chr6: 21530943-21531027 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR399m

Mature mtr-miR399m-5p

• Accession: MIMAT0054778
• Description: Medicago truncatula mtr-miR399m-5p mature miRNA
• Sequence: 8 - GGGCAUGUCUCUAUUGGCAGG - 28
• Evidence: experimental ; unknown

Mature mtr-miR399m-3p

• Accession: MIMAT0011094
• Description: Medicago truncatula mtr-miR399m-3p mature miRNA
• Sequence: 60 - UGCCAAAGGAGAGCUGCCCUA - 80
• Evidence: not_experimental

References

1. 
   "Bonnet E"
   (2007) None: