Stem-loop mtr-MIR390

Accession

MI0005586

Description

Medicago truncatula mtr-MIR390 precursor miRNA

Literature search

10 open access papers mention mtr-MIR390
(38 sentences)

Sequence

96964 reads, 1344.0 reads per million, 111 experiments

cuguuAAGCUCAGGAGGGAUAGCGCCauagaaugucuucuuuuuuugguuccauuuuauugauugaucuucucuugCGCUAUCCAUCCUGAGUUUCAugg
((((.((((((((((.(((((((((...((((.(((.((......((....)).......))..))).))))...))))))))).)))))))))).))))

Structure

    u          G         Cau    u   -u  -uuuuuu  g 
cugu AAGCUCAGGA GGAUAGCGC   agaa guc  uc       ug u
|||| |||||||||| |||||||||   |||| |||  ||       ||  
gguA UUUGAGUCCU CCUAUCGCg   ucuu uag  ag       ac u
    C          A         uuc    c   uu  uuauuuu  c 

Annotation confidence High

Genome context

chr4: 3183409-3183508 [-]

Mature mtr-miR390-5p

• Accession: MIMAT0011072
• Description: Medicago truncatula mtr-miR390-5p mature miRNA
• Sequence: 6 - AAGCUCAGGAGGGAUAGCGCC - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR390-3p

• Accession: MIMAT0054769
• Description: Medicago truncatula mtr-miR390-3p mature miRNA
• Sequence: 77 - CGCUAUCCAUCCUGAGUUUCA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: