Stem-loop mtr-MIR167a

Accession

MI0005572

Description

Medicago truncatula mtr-MIR167a precursor miRNA

Literature search

4 open access papers mention mtr-MIR167a
(15 sentences)

Sequence

805151 reads, 4719.0 reads per million, 111 experiments

aaaagUGAAGCUGCCAGCAUGAUCUAgguuugguuauacaauaguaguauugagaaggaacuauauacguuuuuuuuuuacuauaccacaaaaaaagauuacucucuuucacaaaauagguauuaaagugccaugauuuuugcauuacuaaugggaaaauaaauuuuggacaccgaauuucucacuuuuuuuuuauauagauaggaaauagguuuuggugguauuuuuuugugguacaguaaaaaauagccgcuauauccauacaaguaguacugcuagcauaacccugacuaGGUCAUGCUGUGCUAGCCUCACUccuu
...(((((.((((((((((((((((((....((((((....(((((((((((....(((....((((((.((.(((((((((.(((((((((((((...(((......((.((((((.(((((....)))))...((((((.((((...)))).))))))..))))))))(((((((......((((.((((((((....)))))))).))))))))))))))))))))))))))).))))))))).)).)).))))))).......)))))))))))..))))))....))))))))))))).)).))).)))))....

Structure

-aaa     A   -  -             guuu      acaa           ---agaa   acua    -  u  u         a             gau   ucucuuucacaaaauagguauuaaagugccaugauuuuugcauuacuaaugggaaaauaaauuuugga       uuucuc    u        a 
    agUGA GCU GC CAGCAUGAUCUAg    gguuau    uaguaguauug       gga    uaua cg uu uuuuuuacu uaccacaaaaaaa   uac                                                                    caccgaa      acuu uuuuuuau u
    ||||| ||| || |||||||||||||    ||||||    |||||||||||       |||    |||| || || ||||||||| |||||||||||||   |||                                                                    |||||||      |||| ||||||||  
    UCACU CGA CG GUCGUACUGGauc    ccaaua    aucgucaugau       ccu    auau gc ga aaaaaauga augguguuuuuuu   aug                                                                    gugguuu      ugga aaaggaua a
uucc     C   U  U             aguc      --cg           gaacaua   ----    c  c  u         c             ---   --------------------------------------------------------------------       ------    u        g 

Annotation confidence High

Genome context

chr1: 17502130-17502449 [-]

Mature mtr-miR167a-5p

• Accession: MIMAT0011058
• Description: Medicago truncatula mtr-miR167a-5p mature miRNA
• Sequence: 6 - UGAAGCUGCCAGCAUGAUCUA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR167a-3p

• Accession: MIMAT0054759
• Description: Medicago truncatula mtr-miR167a-3p mature miRNA
• Sequence: 294 - GGUCAUGCUGUGCUAGCCUCACU - 316
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: