miRBase entry: mmu-mir-466e

Stem-loop mmu-mir-466e


Accession
MI0005506
Symbol
MGI: Mir466e
Description
Mus musculus mmu-mir-466e precursor miRNA mir-466
Gene
family?
RF04052; mir-466

Literature search
24 open access papers mention mmu-mir-466e
(77 sentences)

Sequence

19909 reads, 351 reads per million, 100 experiments
guguauguguuGAUGUGUGUGUACAUGUACAUAugugaauaugauauacaUAUACAUACACGCACACAUAAGAcacauaugagc
..(((((((((.((((((((((..(((((..((((((.........)))))))))))..))))))))))..)))))))))....

Structure
--gu         -G          AC     CA      aau 
    guauguguu  AUGUGUGUGU  AUGUA  UAugug   a
    |||||||||  ||||||||||  |||||  ||||||   u
    uauacacAG  UACACACGCA  UACAU  AUacau   g
cgag         AA          CA     --      aua 


Annotation confidence Not enough data
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Genome context
chr2: 10479088-10479171 [+]
Clustered miRNAs
26 other miRNAs are < 10 kb from mmu-mir-466e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-466e-5p

Accession MIMAT0004879
Description Mus musculus mmu-miR-466e-5p mature miRNA
Sequence 12 - GAUGUGUGUGUACAUGUACAUA - 33
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-466e-3p

Accession MIMAT0004880
Description Mus musculus mmu-miR-466e-3p mature miRNA
Sequence 51 - UAUACAUACACGCACACAUAAGA - 73
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009