Stem-loop mmu-mir-881

Accession

MI0005474

Symbol

MGI: Mir881

Description

Mus musculus mmu-mir-881 precursor miRNA mir-881

Gene
family

RF03346; mir-881

Literature search

3 open access papers mention mmu-mir-881
(4 sentences)

Sequence

114307 reads, 2531 reads per million, 44 experiments

ugcaguacaauauuCAGAGAGAUAACAGUCACAUCUuuucuaaaguAACUGUGUCUUUUCUGAAUAGAguaauguuca
.(((.(((..((((((((((((((.((((.((............)).)))))))).))))))))))..))).)))...

Structure

--u   g   aa          -    A    C  AUCUu 
   gca uac  uauuCAGAGA GAUA CAGU AC     u
   ||| |||  |||||||||| |||| |||| ||      
   ugu aug  AUAAGUCUUU CUGU GUCA ug     u
acu   a   AG          U    -    A  aaauc 

Annotation confidence High

Genome context

chrX: 66801944-66802021 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mmu-mir-881

Mature mmu-miR-881-5p

• Accession: MIMAT0004845
• Description: Mus musculus mmu-miR-881-5p mature miRNA
• Sequence: 15 - CAGAGAGAUAACAGUCACAUCU - 36
• Evidence: experimental ; cloned [1], Illumina [3-4]

Mature mmu-miR-881-3p

• Accession: MIMAT0004846
• Description: Mus musculus mmu-miR-881-3p mature miRNA
• Sequence: 47 - AACUGUGUCUUUUCUGAAUAGA - 68
• Evidence: experimental ; cloned [1], 454 [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102