Stem-loop mmu-mir-880

Accession

MI0005473

Symbol

MGI: Mir880

Description

Mus musculus mmu-mir-880 precursor miRNA mir-880

Gene
family

RF03312; mir-880

Literature search

4 open access papers mention mmu-mir-880
(5 sentences)

Sequence

64411 reads, 940 reads per million, 40 experiments

ugcacugcaaUACUCAGAUUGAUAUGAGUCAcuuccuauugcauguUACUCCAUCCUCUCUGAGUAGAguaaggcaca
(((..(((..((((((((..(((..((((.((............)).)))).)))...))))))))..)))..)))..

Structure

--   ac   aa        -UU   AU    C  uuccu 
  ugc  ugc  UACUCAGA   GAU  GAGU Ac     a
  |||  |||  ||||||||   |||  |||| ||      
  acg  aug  AUGAGUCU   CUA  CUCA ug     u
ac   ga   AG        CUC   -C    U  uacgu 

Annotation confidence High

Genome context

chrX: 66800530-66800607 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mmu-mir-880

Mature mmu-miR-880-5p

• Accession: MIMAT0017266
• Description: Mus musculus mmu-miR-880-5p mature miRNA
• Sequence: 11 - UACUCAGAUUGAUAUGAGUCA - 31
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-880-3p

• Accession: MIMAT0004844
• Description: Mus musculus mmu-miR-880-3p mature miRNA
• Sequence: 47 - UACUCCAUCCUCUCUGAGUAGA - 68
• Evidence: experimental ; cloned [1], 454 [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102