miRBase entry: bta-mir-660

Stem-loop bta-mir-660

Accession

MI0005468

Description

Bos taurus bta-mir-660 precursor miRNA mir-660

Gene
family?

RF04285; mir-660

Literature search

13 open access papers mention bta-mir-660
(21 sentences)

Sequence

839340 reads, 252.0 reads per million, 320 experiments

cugcuccuucucccgUACCCAUUGCAUAUCGGAGCUGUgaauucucaaagcaCCUCCUAUGUGCAUGGAUUACAggaggg
........(((((.(((.((((.((((((.((((.(((...........))).)))).))))))))))..))).))))).

Structure

cugcuccu     c   -C    U      C    C   gaau 
        ucucc gUA  CCAU GCAUAU GGAG UGU    u
        ||||| |||  |||| |||||| |||| |||    c
        ggagg CAU  GGUA CGUGUA CCUC acg    u
-------g     A   UA    -      U    C   aaac

Annotation confidence High

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Genome context

X: 87740078-87740157 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-660

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bta-miR-660-5p

Accession	MIMAT0004344
Description	Bos taurus bta-miR-660-5p mature miRNA
Sequence	16 - UACCCAUUGCAUAUCGGAGCUGU - 38
Evidence	experimental cloned [1]

Mature bta-miR-660-3p

Accession	MIMAT0050806
Description	Bos taurus bta-miR-660-3p mature miRNA
Sequence	53 - CCUCCUAUGUGCAUGGAUUACA - 74
Evidence	experimental cloned [1]

References

PubMed ID: 17306260
Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
"Gu Z, Eleswarapu S, Jiang H"
"FEBS Lett (2007) 581:981-988