miRBase entry: cbr-mir-359

Stem-loop cbr-mir-359


Accession
MI0005431
Description
Caenorhabditis briggsae cbr-mir-359 precursor miRNA


Sequence

gacaaaucuucauccgucagagcauaucucaguuacacaacuuccuaaauagugUCACUGGUUAUCCUCUGUCGAAaugaagauguc
((((..(((((((.((.(((((.(((.(.((((.((((.............)))).))))).))).))))).))..)))))))))))

Structure
    aa       -c  u     c   u u    u    aacuu 
gaca  ucuucau  cg cagag aua c cagu acac     c
||||  |||||||  || ||||| ||| | |||| ||||     c
cugu  agaagua  GC GUCUC UAU G GUCA Ugug     u
    --       AA  U     C   U -    C    auaaa 


Annotation confidence Not enough data
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Genome context
chrX: 8054854-8054940 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbr-mir-359
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-359

Accession MIMAT0004298
Description Caenorhabditis briggsae cbr-miR-359 mature miRNA
Sequence 55 - UCACUGGUUAUCCUCUGUCGAA - 76
Evidence not_experimental

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207