miRBase entry: cbr-mir-235a

Stem-loop cbr-mir-235a


Accession
MI0005428
Description
Caenorhabditis briggsae cbr-mir-235a precursor miRNA


Sequence

uccgauccggccauggccaauugcauauauugcuuuuacuuuuucaaaaugcgaaUAUUGCACUUUCCCUGGCCAGAucuga
...((((.(((((.((..((.((((.(((((((((((........)))).)).))))))))).))..))))))).))))...

Structure
ucc    c     u  cc  u    u     -  -    acu 
   gauc ggcca gg  aa ugca auauu gc uuuu   u
   |||| ||||| ||  || |||| ||||| || ||||    
   cuAG CCGGU CC  UU ACGU UAUaa cg aaaa   u
agu    A     -  CU  C    -     g  u    cuu 


Annotation confidence Not enough data
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Genome context
chrI: 10817705-10817786 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-235a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-235a

Accession MIMAT0004295
Description Caenorhabditis briggsae cbr-miR-235a mature miRNA
Sequence 56 - UAUUGCACUUUCCCUGGCCAGA - 77
Evidence not_experimental

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207