miRBase entry: cbr-mir-786

Stem-loop cbr-mir-786


Accession
MI0005419
Description
Caenorhabditis briggsae cbr-mir-786 precursor miRNA


Sequence

gggacccuucccaacaaaaucucaaauaguggcauuuacacaagcaaugguaugUAAUGCCCUGUACGAGAUUUGGUuggugagaagucuc
(((((..((((((((.(((((((..((((.((((((...(((.((....)).)))))))))))))..))))))).))))).)))..)))))

Structure
     cc   -     a       aa    u      uac   a  a 
gggac  uuc ccaac aaaucuc  auag ggcauu   aca gc a
|||||  ||| ||||| |||||||  |||| ||||||   ||| ||  
cucug  gag gguUG UUUAGAG  UGUC CCGUAA   Ugu ug u
     aa   u     G       CA    -      ---   a  g 


Annotation confidence Not enough data
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Genome context
chrX: 13610815-13610905 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-786
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-786

Accession MIMAT0004287
Description Caenorhabditis briggsae cbr-miR-786 mature miRNA
Sequence 55 - UAAUGCCCUGUACGAGAUUUGGU - 77
Evidence not_experimental

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207