Stem-loop ath-MIR833a

Accession

MI0005389

Description

Arabidopsis thaliana ath-MIR833a precursor miRNA

Literature search

2 open access papers mention ath-MIR833a
(3 sentences)

Sequence

ggacguagaugguacucuuacagauggugaucgugaaaacaaacggaggaguuUGUUUGUUGUACUCGGUCUAGUucaaaccaaaacaucuuugcaaauauguaugguuugagcUAGACCGAUGUCAACAAACAAGcugcuucguuuguauucaccaucaacaucuuuaagaaacgcugcaccacuc
((..((((.((....(((((.(((((.((((.(((((.((((((((((.(((((((((((((.((((((((((((((((((((..((((.((....)).)))).)))))))))))))))))).))))))))))))))).)))))))))).))))).)))).))))).)))))..)))))).))....

Structure

----  ac    a  guac     c     g    c     a          g             U  -                  aa    c  u 
    gg  guag ug    ucuua agaug ugau gugaa acaaacggag aguuUGUUUGUUG AC UCGGUCUAGUucaaacca  acau uu g
    ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||  
    cc  cguc gc    agaau ucuac acua cacuu uguuugcuuc ucGAACAAACAAC UG AGCCAGAUcgaguuuggu  ugua aa c
cuca  -a    -  --aa     u     a    c     a          g             -  U                  -a    u  a 

Annotation confidence Not enough data

Genome context

chr1: 29525151-29525337 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR833a

Mature ath-miR833a-5p

• Accession: MIMAT0004252
• Description: Arabidopsis thaliana ath-miR833a-5p mature miRNA
• Sequence: 54 - UGUUUGUUGUACUCGGUCUAGU - 75
• Evidence: experimental ; 454 [1-2], cloned [2]

Mature ath-miR833a-3p

• Accession: MIMAT0004253
• Description: Arabidopsis thaliana ath-miR833a-3p mature miRNA
• Sequence: 115 - UAGACCGAUGUCAACAAACAAG - 136
• Evidence: experimental ; 454 [1-2], cloned [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219