Stem-loop ath-MIR825

Accession

MI0005381

Description

Arabidopsis thaliana ath-MIR825 precursor miRNA MIR825

Gene
family

RF03826; MIR825

Literature search

2 open access papers mention ath-MIR825
(2 sentences)

Sequence

cuuucuauaauuacuuuuuguauagaauucacuaguugauuccaucgacucguucaagcaccagcucgaagaagcuuagcuaauuuaucuuagaaaauaaugaaaaagcuaugcUUCUCAAGAAGGUGCAUGAACaaguugauguauauuuugauguguaaagaccaaaauuggaucucacaugug
..(((((((...........)))))))...............((((((((.(((((.(((((..((.((.(((((.(((((..(((((...........)))))..))))).))))))).))..))))).))))).)))))))).........(((((...((((((....))).))))))))...

Structure

cuuucuauaauuacuuuuuguauagaauucacuaguugauuc        c     a     ag  c  a     u     aa     cuua 
                                          caucgacu guuca gcacc  cu ga gaagc uagcu  uuuau    g
                                          |||||||| ||||| |||||  || || ||||| |||||  |||||    a
                                          guaguuga CAAGU CGUGG  GA CU CUUcg aucga  aagua    a
guguacacucuagguuaaaaccagaaauguguaguuuuauau        a     A     AA  A  -     u     aa     auaa 

Annotation confidence Not enough data

Genome context

chr2: 11159660-11159845 [+]

Mature ath-miR825

• Accession: MIMAT0004241
• Description: Arabidopsis thaliana ath-miR825 mature miRNA
• Sequence: 115 - UUCUCAAGAAGGUGCAUGAAC - 135
• Evidence: experimental ; 454 [1], cloned [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219